The objective of this article is: a) to identify Peruvian researchers with high, medium and low impact factor according to Web of Science and Scopus databases; b) to identify the bibliometric factor with the highest influence on h-index of Peruvian researchers; c) to compare h-index between Web of Science and Scopus, at an individual and institutional level. Data were collected from Web of Science and Scopus (189 Peruvian researchers, 28 institutions on Web of Science and 33 on Scopus), between September 18- 23, 2013. Then, institutional registries were created and linear regression analysis with stepwise procedure was run to identify bibliometric factors with higher influence on the h-index of Peruvian researchers. Web of Science and Scopus showed interesting simmilarities in the h-index of Peruvian academic institutions. At individual level, documents indexed in citation database had the highest influence on the h-index. Regression model identified bibliometric factors with higher influence on the h-index of Peruvian researchers, however further large scale studies are needed to improve external validity.